Scientific Collaborator for Setting Up Spatial Omics Technologies

Vor 5 Tagen

Basel, Schweiz Universität Basel Vollzeit

**Scientific Collaborator for setting up Spatial Omics Technologies**

**80-100%**

The Department of Biomedicine (DBM) is a joint effort between the University of Basel and the University Hospitals Basel. It unites basic and clinical scientists to advance our understanding of health and disease and to develop pioneering therapies benefiting the lives of patients in areas of unmet need. With more than 70 research groups and 900 employees, the Department of Biomedicine is the largest department at the University. We are located in the heart of Basel across six different locations. Be part of our future The group of Judith Zaugg at the DBM is currently seeking a highly motivated Scientific Collaborator to drive innovation in spatial omics technologies and advanced imaging approaches for research in the Zaugg group. This position will focus on optimizing spatial multi-omics protocols, developing imaging pipelines, and leading technology implementation in collaborative projects. The position is limited to 2 years with possibility of extension (start is October 2025 at the latest).

**Your position**
- Develop and optimize spatial omics technologies (e.g., in situ sequencing, multiplex immunostaining, and spatial transcriptomics).
- Lead interdisciplinary collaborations, providing expertise in antibody bioconjugation, tissue handling (FFPE and fresh-frozen), and histology.
- Supervise and train students, postdocs, and technical staff in advanced microscopy, spatial omics protocols, and data analysis.
- Actively manage and execute multiple research projects, including design, cost optimization, and troubleshooting.
- Coordinate with external collaborators and funding agencies for technology development and project dissemination.
- Contribute to teaching and outreach, including participation in international courses and workshops.

**Your profile**
- Ph.D. in Molecular Biology, Biochemistry, or a related field with substantial experience as a scientist.
- Strong expertise in spatial omics technologies, multiplex immunostaining, in situe sequencing approaches, and advanced imaging techniques, as well as custom imaging setups.
- Proven track record in antibody labeling and bioconjugation techniques, as well as the development of custom antibody panels and in situ sequencing technology gene panel.
- Experience with next-generation sequencing (NGS) methods (e.g., RNA-Seq, ATAC-Seq, and custom library preparation).
- Tracked human tissue material handling and preparation.
- Proficiency supervising interdisciplinary teams, multiple user projects managment and developing training programs for scientific methods.
- Demonstrated success in managing research projects and establishing collaborations.
- Excellent communication and organizational skills, with experience in writing scientific reports and manuscripts.
- Fluency in English (required)

**We offer you**
- A CV (with a full list of publications).
- A cover letter detailing your motivation and relevant expertise (1 page max).

  • Bioinformatics Analyst—Translational Omics

    vor 3 Wochen

    Basel, Schweiz NEXUS Personalized Health Technologies Vollzeit

    An innovative firm is seeking a motivated bioinformatics professional to analyze high-throughput multi-omics data in a collaborative environment. This role involves developing reproducible analysis pipelines and reporting results in biomedical and clinical settings. You will work alongside academic institutions and hospitals, ensuring adherence to best...

  • Scientific Sales Representative, Cell Culture

    vor 2 Wochen

    Basel, Schweiz STEMCELL Technologies Vollzeit

    **Job Description Summary**: Reporting to the Sales Manager, the Scientific Sales Representative’s primary responsibility is to manage the existing relationship of STEMCELL Technologies as well as to generate revenue in the territory by identifying potential customers, introducing them to our products and working with them by providing technical support...

  • Scientific Computing

    Vor 5 Tagen

    Basel, Schweiz Universität Basel Vollzeit

    **Your position** **Responsibilities** With the support of the existing team of sysadmins, our new collaborator will: - Configure, deploy, maintain and document scientific computing frameworks offered as a service (JupyterHub, RStudio, Shiny, etc.), with a focus on stability and performance. - Interact with users of the service (in particular the Center...

  • Scientific Content Data Expert

    vor 2 Wochen

    Basel, Schweiz F. Hoffmann-La Roche Gruppe Vollzeit

    Overview At Roche you can show up as yourself, embraced for the unique qualities you bring. Our culture encourages personal expression, open dialogue, and genuine connections, where you are valued, accepted and respected for who you are, allowing you to thrive both personally and professionally. This is how we aim to prevent, stop and cure diseases and...

  • Spatial Transcriptomics Scientist

    Vor 5 Tagen

    Basel, Schweiz Friedrich Miescher Institute Vollzeit

    The Friedrich Miescher Institute for Biomedical Research (FMI) in Basel, Switzerland is a world-class research institute dedicated to investigating the molecular mechanisms of health and disease in the fields of neurobiology, genome regulation and multicellular systems. FMI research is supported by state-of-the-art core facilities, employing various...

  • Postdoc Position in Spatial Conservation of Species

    Vor 5 Tagen

    Basel, Schweiz Eawag Vollzeit

    Eawag, the Swiss Federal Institute of Aquatic Science and Technology, is an internationally networked aquatic research institute within the ETH Domain (Swiss Federal Institutes of Technology). Eawag conducts research, education and expert consulting to achieve the dual goals of meeting direct human needs for water and maintaining the function and integrity...

  • Research Specialist in Microscopy and Spatial Transcriptomics

    Vor 4 Tagen

    Basel, Schweiz The Biozentrum, University of Basel Vollzeit

    Your position This position will establish and operate advanced imaging and spatial transcriptomics pipelines for high-resolution molecular profiling in intact tissues. The specialist will develop and apply methods enabling large-volume processing-such as whole brain spatial transcriptomics-and integrate techniques including expansion microscopy and...

  • Research Specialist in Microscopy and Spatial Transcriptomics

    vor 6 Stunden

    Basel, Schweiz The Biozentrum, University of Basel Vollzeit

    Your position This position will establish and operate advanced imaging and spatial transcriptomics pipelines for high-resolution molecular profiling in intact tissues. The specialist will develop and apply methods enabling large-volume processing-such as whole brain spatial transcriptomics-and integrate techniques including expansion microscopy and...

  • Bioinformatics Analyst in Basel or Zurich

    vor 2 Wochen

    Basel, Schweiz NEXUS Personalized Health Technologies Vollzeit

    The primary focus of your position will be the project-tailored analyses and results reporting of diverse high-throughput multi-omics data types, such as whole-genome and transcriptome, single-cell and spatial data. Our projects are typically in a biomedical research or clinical diagnostics setting, and their scope can be very wide, ranging from basic NGS...

  • Experiential & Spatial Design Manager

    vor 3 Wochen

    Basel, Schweiz Proclinical Staffing Vollzeit

    Proclinical is seeking a creative Experiential/Spatial Design Manager to coordinate the creative execution and seamless delivery of international congress experiences. Please note this is not a traditional congress and events management role! This role focuses on ensuring consistency, quality, and innovation across all touchpoints while working in a dynamic,...