Aktuelle Jobs im Zusammenhang mit Research Specialist in Image Analysis - Basel, Basel-Stadt - Universität Basel
-
Basel, Basel-Stadt, Schweiz Universität Basel VollzeitResearch Specialist in Computational Neuroscience and Data Analysis %) Starting on April 15, 2026 or as per agreement The Biozentrum of the University of Baselis one of the world's leading life sciences institutes. With 32 groups and 500 employees, we are a dynamic and international research community that has spawned many fundamental discoveries in...
-
Basel, Basel-Stadt, Schweiz Universität Basel VollzeitThe Biozentrum of the University of Basel is one of the world's leading life sciences institutes. With 32 groups and 500 employees, we are a dynamic and international research community that has spawned many fundamental discoveries in biology and medicine as well as several Nobel Laureates. The Biozentrum is establishing the Dietschy Facility for Tissue...
-
Basel, Basel-Stadt, Schweiz Universität Basel VollzeitResearch Specialist in Microscopy and Spatial Transcriptomics %) Starting April 15, 2026 or as per agreement The Biozentrum of the University of Basel is one of the world's leading life sciences institutes. With 32 groups and 500 employees, we are a dynamic and international research community that has spawned many fundamental discoveries in biology and...
-
Basel, Basel-Stadt, Schweiz Universität Basel VollzeitThe Biozentrum of the University of Basel is one of the world's leading life sciences institutes. With 32 groups and 500 employees, we are a dynamic and international research community that has spawned many fundamental discoveries in biology and medicine as well as several Nobel Laureates. The Biozentrum is establishing the Dietschy Facility for Tissue...
-
Postdoctoral Researcher
vor 1 Woche
Basel, Basel-Stadt, Schweiz Universität Basel VollzeitIn the HEADS Lab, Department of Sport, Exercise and Health, Faculty of Medicine, University of Basel, a fixed-term postdoctoral position (4 years) is available starting on 1st June 2026 or later.The main research focus of our division is the relationship between physical activity and cognitive performance across development. Possible research topics within...
-
Research Support
vor 1 Woche
Basel, Basel-Stadt, Schweiz Universität Basel VollzeitThe Department of Biomedical Engineering (DBE) at the University of Basel is a joint venture between the University of Basel, the University Hospital Basel, and the University Children's Hospital Basel. The DBE currently employs approximately 130 researchers who conduct cutting-edge research in the field of biomedical engineering in collaboration with the...
-
PhD position in Cancer Research
vor 1 Woche
Basel, Basel-Stadt, Schweiz Universität Basel VollzeitThe Department of Biomedicine is a joint effort between the University of Basel and the University Hospitals Basel. It unites basic and clinical scientists to advance our understanding of health and disease and to develop pioneering therapies benefiting the lives of patients in areas of unmet need. With more than 70 research groups and 800 employees, the...
-
Research Support Communication
vor 1 Woche
Basel, Basel-Stadt, Schweiz Universität Basel VollzeitResearch Support & Communication The Department of Biomedical Engineering (DBE) at the University of Basel is a joint venture between the University of Basel, the University Hospital Basel, and the University Children's Hospital Basel. The DBE currently employs approximately 130 researchers who conduct cutting-edge research in the field of biomedical...
-
Scientific Researcher
vor 2 Wochen
Basel, Basel-Stadt, Schweiz We make it GmbH VollzeitWe make it GmbH is a company operating nationally in Switzerland. Thanks to many years of successful experience, it has a high level of competence in the personnel services sector. Concentration of placement activities on the core areas of industry, technology, office/administration, engineering, pharmaceuticals and IT. We make it GmbH places the highest...
-
Basel, Basel-Stadt, Schweiz Roche VollzeitJOB DESCRIPTION At Roche you can show up as yourself, embraced for the unique qualities you bring. Our culture encourages personal expression, open dialogue, and genuine connections, where you are valued, accepted and respected for who you are, allowing you to thrive both personally and professionally. This is how we aim to prevent, stop and cure diseases...
Research Specialist in Image Analysis
vor 2 Wochen
Starting on April 15, 2026 or as per agreement
The Biozentrum of the University of Basel is one of the world's leading life sciences institutes. With 32 groups and 500 employees, we are a dynamic and international research community that has spawned many fundamental discoveries in biology and medicine as well as several Nobel Laureates.
The Biozentrum is establishing the Dietschy Facility for Tissue Science , a new core unit enabling systematic investigation of individual cells within intact tissues. The facility will integrate state-of-the-art methods for spatial transcriptomics, advanced microscopy, volumetric imaging, neuronal activity mapping, and multimodal data analysis, with an initial focus on neuroscience. To build this interdisciplinary platform, we invite applications for three PhD-level Research Specialists: Microscopy and Spatial Transcriptomics Specialist; Image Analysis Specialist (this position); Computational Neuroscience and Data Analysis Specialist. These positions will work closely together and will support a broad user base across the Biozentrum. Become part of our community
Your responsibilities
- Build and maintain multimodal registration pipelines to align calcium imaging, histological, volumetric, and transcriptomic data.
- Establish single-cell correspondence across datasets, accounting for tissue deformation and using fluorescent landmarks or anatomical features.
- Perform advanced segmentation of complex tissues, including dense or heterogeneous molecular labeling.
- Align datasets to common coordinate frameworks (e.g., Allen Brain Atlas) and integrate public reference volumes.
- Support segmentation and registration of spatial transcriptomics datasets, incorporating immunostaining channels.
- Process and visualize large 3D volumes generated by facility instruments.
- Develop tools for multimodal integration (imaging, transcriptomics, proteomics).
- Train researchers in computational workflows and best practices.
- Collaborate closely with microscopy and data-analysis specialists in the Biozentrum and broader Basel community.
- PhD in computational biology, computer science, biomedical engineering, neuroscience, or related field.
- Expertise in image registration, segmentation, and large-scale 3D imaging analysis.
- Proficiency with tools such as Python, MATLAB, ITK/VTK, Napari, Fiji, ANTs, Elastix and emerging AI-assisted methods.
- Experience with atlas alignment, multimodal registration, and dense tissue segmentation.
- Familiarity with integrating functional, anatomical, and molecular datasets desirable.
- Strong communication skills, interest in interdisciplinary work, and ability to train students and postdocs.
Basel is a cosmopolitan city with people from 150 nations. Located on the border where three countries meet – Switzerland, Germany and France – it is Europe's most important life sciences hub. Basel provides a high standard of living and a rich cultural atmosphere Application / Contact
